Common Pathogens and Mechanisms

Immunodeficiency TypeCommon PathogensCommon Infection SitesUnderlying Mechanism
B-cell Deficiencies- Encapsulated bacteria (S. pneumoniae, H. influenzae, M. catarrhalis)
- Giardia lamblia
- Nonenveloped viruses (enterovirus, rotavirus)
- Sinuses
- Ears
- Lungs
- Bloodstream
- GI tract
Decreased or absent antibody production impairs opsonization and neutralization of pathogens, especially encapsulated bacteria that require antibody-mediated clearance
T-cell Deficiencies- Viruses (CMV, EBV, VZV, HSV)
- Fungi (Candida, P. jirovecii)
- Mycobacteria
- Intracellular parasites
- Skin/mucous membranes
- Lungs
- CNS
- Systemic dissemination
Impaired cell-mediated immunity against intracellular pathogens, defective cytokine production, and decreased killing of infected cells
Combined Immunodeficiencies- Broad spectrum of pathogens
- Bacteria, viruses, fungi, protozoa
- Opportunistic infections
- Live vaccine strains
- Multiple organ systems
- Lungs
- GI tract
- Skin
- Systemic infections
Profound defects in both cellular and humoral immunity, affecting both adaptive and innate immune functions
Neutrophil/Phagocyte Disorders- Catalase-positive bacteria (S. aureus, Burkholderia, Serratia, Nocardia)
- Fungi (Aspergillus, Candida)
- Gram-negative bacteria
- Skin/soft tissue abscesses
- Lungs
- Liver abscesses
- Lymph nodes
- GI tract
Defective phagocyte recruitment, ingestion, or killing of pathogens; impaired respiratory burst (in CGD); defective chemotaxis
Complement Deficiencies- Encapsulated bacteria
- Neisseria species (meningitidis, gonorrhoeae)
- S. pneumoniae
- H. influenzae
- Meninges
- Bloodstream
- Respiratory tract
- Urogenital tract
Impaired opsonization and bacterial killing (like B cell deficiency)

Clinical Pearls:

  • Recurrent sinopulmonary infections with encapsulated bacteria suggest antibody deficiency
  • Mucocutaneous candidiasis points toward T-cell dysfunction
  • Severe, life-threatening infections beginning in early infancy suggest SCID
  • Deep-seated abscesses with catalase-positive organisms suggest chronic granulomatous disease
  • Recurrent Neisserial infections are hallmarks of terminal complement deficiencies