tidySummarizedExperiment provides a bridge between Bioconductor SummarizedExperiment and the tidyverse. It creates an invisible layer that enables viewing the Bioconductor SummarizedExperiment object as a tidyverse tibble, and provides SummarizedExperiment-compatible dplyr, tidyr, ggplot and plotly functions. This allows users to get the best of both Bioconductor and tidyverse worlds.
tidybulk
Seamlessly integrated with tidySummarizedExperiment
Provide many out-of-box functions for bulk RNA-seq pipeline