ggmagnify creates a magnified inset of part of a ggplot object. The magnified area can be a (rounded) rectangle, an ellipse, a convex hull of points, or an arbitrary shape. Borders can be drawn around the target area and the inset, along with projection lines and/or shading between the two. The inset can have a drop shadow.
tidySummarizedExperiment provides a bridge between Bioconductor SummarizedExperiment and the tidyverse. It creates an invisible layer that enables viewing the Bioconductor SummarizedExperiment object as a tidyverse tibble, and provides SummarizedExperiment-compatible dplyr, tidyr, ggplot and plotly functions. This allows users to get the best of both Bioconductor and tidyverse worlds.
tidybulk
Seamlessly integrated with tidySummarizedExperiment
Provide many out-of-box functions for bulk RNA-seq pipeline
STCAT is an automated T cell type annotation tool for scRNA-seq datasets. It based on a high-confidence T cell subtypes and states reference. The reference can be found in our TCellAtlas portal. STCAT can automatically annotate T cell subtypes and states for scRNA-seq data of different conditions and tissues.
